ersilia.db.hubdata package¶

Submodules¶

ersilia.db.hubdata.interfaces module¶

class ersilia.db.hubdata.interfaces.JsonModelsInterface(config_json=None)[source]¶

Bases: ErsiliaBase

Interface for fetching model metadata from models stored in S3.

Parameters:: config_json (dict, optional) – Configuration settings for initializing the interface.

identifier_exists(model_id)[source]¶

Checks if a model identifier exists in the JSON file.

Parameters:: model_id (str) – Identifier of the model to check.
Returns:: True if the identifier exists, False otherwise.
Return type:: bool

items()[source]¶

Yields models from the JSON file one by one.

Yields:: dict – A model from the JSON file.

items_all()[source]¶

Retrieves all models from the JSON file.

Returns:: List of all models.
Return type:: list

ersilia.db.hubdata.localslugs module¶

class ersilia.db.hubdata.localslugs.SlugDb(config_json=None)[source]¶

Bases: ErsiliaBase

Manages slug database operations for models.

Parameters:: config_json (dict, optional) – Configuration settings for initializing the slug database.

clean()[source]¶: Cleans the database by deleting all entries.

create_table()[source]¶: Creates the slugs table in the database if it does not exist.

delete(model_id, slug)[source]¶

Deletes a specific entry from the database by model ID and slug.

Parameters:

model_id (str) – Identifier of the model.
slug (str) – Slug associated with the model.

delete_by_model_id(model_id)[source]¶

Deletes entries from the database by model ID.

Parameters:: model_id (str) – Identifier of the model to delete.

delete_by_slug(slug)[source]¶

Deletes entries from the database by slug.

Parameters:: slug (str) – Slug to delete.

insert(model_id, slug)[source]¶

Inserts a model ID and slug into the database.

Parameters:

model_id (str) – Identifier of the model.
slug (str) – Slug associated with the model.

models_of_slug(slug)[source]¶

Retrieves model IDs associated with a specific slug.

Parameters:: slug (str) – Slug to search for.
Returns:: Set of model IDs associated with the slug.
Return type:: set

slugs_of_model(model_id)[source]¶

Retrieves slugs associated with a specific model ID.

Parameters:: model_id (str) – Identifier of the model to search for.
Returns:: Set of slugs associated with the model ID.
Return type:: set

ersilia.db.hubdata.sanitize module¶

ersilia.db.hubdata.tables module¶

class ersilia.db.hubdata.tables.DynamoDbTable[source]¶

Bases: object

Base class for DynamoDB tables.

class ersilia.db.hubdata.tables.ModelsTable[source]¶

Bases: DynamoDbTable

Table for storing models.

class ersilia.db.hubdata.tables.PredictionsTable[source]¶